i work with amino acid sequences and i want to use a selfmade model to tell me something about it, lets call it f(seq). Now i want to know the contribution of every position in the sequence onto the model. E.q. My question is what is the importance/effect of amino acid A occuring at position I in the sequence with respect to the model?
How do i visualize something like that?
I want to use my model also on several sequences of differing lengths. Somehow this throws a monkeywrench into my plans of using a neural net...
My question is simple yet i did not find anything about it. Pointers would be appreciated. Or any comment you might have. This whole idea of mine is pretty unfinished and i dont really know yet what i want. So feel free to criticize, i will update the question accordingly.
Ah and if this is the wrong place to put this here please tell me also (:
cheers and thanks