Note: I am considering here property testing in the query model, with regard to Hamming distance. (So, for instance, of Boolean functions—I'm phrasing it that way below.) I am in particular not interested in separations in distribution testing.
The property testing model (for Boolean functions) asks for algorithms that, for a fixed property $\mathcal{P}\subseteq 2^{2^n}$, are provided with a proximity parameter $\varepsilon \in (0,1)$ and query access to an arbitrary function $f\colon \{0,1\}^n \to \{0,1\}$, return either $\textsf{accept}$ or $\textsf{reject}$, such that:
if $f\in \mathcal{P}$, then the algorithm returns $\textsf{accept}$ with probability at least $2/3$;
if $d(f,\mathcal{P}) > \varepsilon$, then the algorithm returns $\textsf{reject}$ with probability at least $2/3$;
where $d(f,\mathcal{P}) \stackrel{\rm def}{=} \inf_{g\in \mathcal{P}} d_H(f,g)$ is the minimum (Hamming) distance between $f$ and a function satisfying the property.
Tolerant testing (as introduced by Parnas, Ron, and Rubinfeld) relaxes the first (completeness) guarantee from $d(f,\mathcal{P}) = 0$ to $d(f,\mathcal{P})\leq \varepsilon'$, where $0\leq \epsilon' < \varepsilon$ is another input to the algorithm. In particular, tolerant testing is at least as hard as testing, by choosing $\varepsilon' = 0$.
However, I am aware of only very few separations between testing and tolerant testing which show the latter to be actually harder, for "natural" properties of functions $\mathcal{P}$. (Of course, here the word "natural" is fuzzily defined; I guess we recognize what it means when we see it.)
An example (for contrived properties) was given by Fischer and Fortnow [1], where they provide a property with $O_{\varepsilon,\varepsilon'}(1)$-query testers, while every tolerant tester requires $n^{\Omega(1)}$ queries. This is the extent of my knowledge regarding published or available results.
Is there any such separation known for an (arguably) natural property of Boolean functions? If not, of functions $f\colon \{0,1\}^n \to \mathbb{R}$, or $f\colon [n]^d \to \mathbb{R}$?
[1] Tolerant Versus Intolerant Testing for Boolean Properties, Eldar Fischer and Lance Fortnow. Theory of Computing, 2006. http://theoryofcomputing.org/articles/v002a009/