For counting the number of inversions in an array, there are many $O(n \log n)$ algorithms, e.g. the one that modifies Merge Sort. There is an easy $\Omega(n)$ lower bound simply because you have to look at all the elements.
I saw some faster algorithms in the RAM model, such as this $O(n \sqrt{\log n})$ algorithm for a permutation on $n$ elements: http://people.csail.mit.edu/mip/papers/invs/paper.pdf.
Is anything else known in the comparison model for inversion counting? I'm mainly curious if there are better lower bounds.