Motivated by these posts, An NP-complete variant of factoring and Relationship between symmetry and computational intractability, It seems to be worthwhile to investigate the different factors that increase the hardness of problems in $NPI$ from an intermediate complexity to full $NP$-completeness. I'm interested in other $NP$-complete variants of $NPI$ problems. Ideally, a recent survey paper of $NP$-complete variants of $NPI$ problems would be the best answer?
EDIT July 1st, 2012 The bounty will be awarded to the person that lists the maximum number of such problems.